BioPortal

Integrates with BioPortal's API to search, annotate, and explore over 1,200 biological ontologies including medical terminologies like NCIT, DOID, and MESH with batch processing, text annotation, and analytics capabilities for bioinformatics research and clinical text processing.

Provides access to the BioOntology API for searching, annotating, and exploring over 1,200 biological ontologies including medical terminologies like NCIT, DOID, and MESH. Built by Moudather Chelbi from Augmented Nature using TypeScript and the Model Context Protocol SDK, the implementation offers nine specialized tools covering term search with advanced filtering, text annotation with configurable parameters, ontology recommendations with customizable weights, batch processing capabilities, and analytics data retrieval. Features comprehensive input validation, robust error handling, resource templates for direct data access, and support for all ontologies available in BioPortal, making it valuable for bioinformatics researchers analyzing biological data, medical professionals annotating clinical texts, and developers building applications that require semantic understanding of biological and medical terminology.